| East |
| Week 1 |
| 9/10 | Kajima Deers | IBM BigBlue | 45-14 |
| 9/11 | Asahi Beer Silver Star | All Mitsubishi Lions | 19-14 |
| 9/13 | Penta-Ocean Construction Pirates | Gakusei-Engokai Rocbull | 17-20 |
| Week 2 |
| 9/23 | Penta-Ocean Construction Pirates | All Mitsubishi Lions | 21-24 |
| 9/25 | Kajima Deers | Gakusei-Engokai Rocbull | 24-7 |
| 9/25 | IBM BigBlue | Asahi Beer Silver Star | 3-16 |
| Week 3 |
| 10/4 | Kajima Deers | All Mitsubishi Lions | 20-0 |
| 10/5 | Gakusei-Engokai Rocbull | IBM BigBlue | 25-27 |
| 10/10 | Asahi Beer Silver Star | Penta-Ocean Construction Pirates | 21-7 |
| Week 4 |
| 10/23 | Asahi Beer Silver Star | Gakusei-Engokai Rocbull | 7-3 |
| 10/24 | Kajima Deers | Penta-Ocean Construction Pirates | 21-7 |
| 10/24 | All Mitsubishi Lions | IBM BigBlue | 13-13 |
| Week 5 |
| 11/2 | Kajima Deers | Asahi Beer Silver Star | 20-0 |
| 11/7 | Penta-Ocean Construction Pirates | IBM BigBlue | 32-3 |
| 11/7 | All Mitsubishi Lions | Gakusei-Engokai Rocbull | 16-16 |
| Team | W | L | T | PF | PA | Pts |
| Kajima Deers | 5 | 0 | 0 | 130 | 28 | 10 |
| Asahi Beer Silver Star | 4 | 1 | 0 | 63 | 47 | 8 |
| All Mitsubishi Lions | 1 | 2 | 2 | 67 | 89 | 4 |
| IBM BigBlue | 1 | 3 | 1 | 60 | 131 | 3 |
| Gakusei-Engokai Rocbull | 1 | 3 | 1 | 71 | 91 | 3 |
| Penta-Ocean Construction Pirates | 1 | 4 | 0 | 84 | 89 | 2 |
|
| Central |
| Week 1 |
| 9/12 | Onward Skylarks | Tōkyō Gas Creators | 62-19 |
| 9/14 | Nissan Skyliners | Club Huskies | 31-3 |
| 9/15 | Obic Seagulls | Fujitsu Frontiers | 27-24 |
| Week 2 |
| 9/23 | Onward Skylarks | Nissan Skyliners | 55-14 |
| 9/23 | Obic Seagulls | Club Huskies | 77-3 |
| 9/25 | Fujitsu Frontiers | Tōkyō Gas Creators | 35-10 |
| Week 3 |
| 10/6 | Onward Skylarks | Fujitsu Frontiers | 33-14 |
| 10/9 | Tōkyō Gas Creators | Club Huskies | 24-21 |
| 10/11 | Obic Seagulls | Nissan Skyliners | 38-7 |
| Week 4 |
| 10/23 | Onward Skylarks | Club Huskies | 91-3 |
| 10/23 | Obic Seagulls | Tōkyō Gas Creators | 55-0 |
| 10/24 | Fujitsu Frontiers | Nissan Skyliners | 22-24 |
| Week 5 |
| 11/1 | Onward Skylarks | Obic Seagulls | 17-6 |
| 11/6 | Fujitsu Frontiers | Club Huskies | 80-14 |
| 11/6 | Nissan Skyliners | Tōkyō Gas Creators | 66-6 |
| Team | W | L | T | PF | PA | Pts |
| Onward Skylarks | 5 | 0 | 0 | 258 | 56 | 10 |
| Obic Seagulls | 4 | 1 | 0 | 203 | 51 | 8 |
| Nissan Skyliners | 3 | 2 | 0 | 142 | 124 | 6 |
| Fujitsu Frontiers | 2 | 3 | 0 | 175 | 108 | 4 |
| Tōkyō Gas Creators | 1 | 4 | 0 | 59 | 239 | 2 |
| Club Huskies | 0 | 5 | 0 | 44 | 303 | 0 |
|
| West |
| Week 1 |
| 9/12 | Naigai Denki Marvies | Matsushita Denko Impulse | 0-45 |
| 9/12 | Asahi Soft Drinks Challengers | Finies Football Club | 27-19 |
| 9/12 | As One Black Eagles | Hankyu Bruins | 37-0 |
| Week 2 |
| 9/26 | Matsushita Denko Impulse | Hankyu Bruins | 68-0 |
| 9/26 | Asahi Soft Drinks Challengers | Naigai Denki Marvies | 14-6 |
| 9/26 | As One Black Eagles | Finies Football Club | 37-14 |
| Week 3 |
| 10/9 | Matsushita Denko Impulse | Finies Football Club | 23-0 |
| 10/9 | Asahi Soft Drinks Challengers | As One Black Eagles | 36-7 |
| 10/9 | Naigai Denki Marvies | Hankyu Bruins | 23-0 |
| Week 4 |
| 10/23 | Matsushita Denko Impulse | As One Black Eagles | 38-0 |
| 10/24 | Asahi Soft Drinks Challengers | Hankyu Bruins | 35-0 |
| 10/24 | Naigai Denki Marvies | Finies Football Club | 13-10 |
| Week 5 |
| 11/6 | As One Black Eagles | Naigai Denki Marvies | 12-7 |
| 11/6 | Matsushita Denko Impulse | Asahi Soft Drinks Challengers | 20-19 |
| 11/6 | Hankyu Bruins | Finies Football Club | 6-31 |
| Team | W | L | T | PF | PA | Pts |
| Matsushita Denko Impulse | 5 | 0 | 0 | 194 | 19 | 10 |
| Asahi Soft Drinks Challengers | 4 | 1 | 0 | 131 | 52 | 8 |
| As One Black Eagles | 3 | 2 | 0 | 93 | 95 | 6 |
| Naigai Denki Marvies | 2 | 3 | 0 | 49 | 81 | 4 |
| Finies Football Club | 1 | 4 | 0 | 74 | 106 | 2 |
| Hankyu Bruins | 0 | 5 | 0 | 6 | 194 | 0 |
|
| Final 6 | | |
| Wild Card Games | | |
| 11/21 | Asahi Soft Drinks Challengers | Asahi Beer Silver Star | 7-10 |
| 11/21 | Kajima Deers | Obic Seagulls | 3-10 |
| Semifinals | | |
| 12/4 | Onward Skylarks | Asahi Beer Silver Star | ot 10-13 |
| 12/5 | Matsushita Denko Impulse | Obic Seagulls | 10-7 |
| Japan X Bowl | | |
| 12/18 | Matsushita Denko Impulse | Asahi Beer Silver Star | 15-6 |
| Rice Bowl | | |
| 1/3 | Matsushita Denko Impulse | Ritsumeikan University Panthers | 26-7 |
|
| Relegation | | |
| 12/4 | Hankyu Bruins | Iwatani Sidewinders | 15-24 |
| 12/11 | Penta-Ocean Construction Pirates | Tōkyō MPD Eagles | 60-0 |
| 12/11 | Club Huskies | Renesas Hurricanes | 33-41 |
|